Thomas Charles Ferree

        Department of Radiology
        University of California San Francisco

Research

Combining functional neuroimaging (EEG, MEG, fMRI), signal processing,
and computational modeling to study human brain dynamics.

Background

Biographical Sketch

Curriculum Vitae

Teaching

Bioengineering 245: Electromagnetic Neuroimaging

NemaSys: The nematode simulator.

Publications

Ziai NG, Norcia AM, Wade AR, Watnik MR, Willits NH, Ferree TC. "Performance of magnitude-squared coherence for fMRI signal detection, " in preparation.

Ferree TC, Calvisi ML, Szeri AJ, Liley DTJ, Norcia AM. "EEG and fMRI responses to sinusoidal contrast modulation, " in preparation.

Kontsevich LL, Ferree TC, Tyler CW. " Independent components of BOLD signals and neural responses underlying these components, " submitted.

Calvisi ML, Szeri AJ, Liley DTJ, Ferree TC (2004). "Theoretical study of BOLD response to sinusoidal input."
In: Proceedings of 25th Annual Conference of the IEEE Engineering in Medicine and Biology Society, 659-662.

Ferree TC, Kramer MA, McGonigle DM, Hwa RC (2005). "Quantifying scaling properties of neurophysiological time series."
In: Wenger MJ and Schuster C (Eds.) Proceedings of the 3rd Annual Meeting of the Notre Dame Series on Quantitative
Methodologies in Psychology: Statistical and Process Models of Cognitive Aging. Erlbaum, in press.

Ferree TC, Hwa RC (2005). "Electrophysiological measures of acute cerebral ischemia." Physics in Medicine and Biology 50: 3927-3939.

Hwa RC, Ferree TC (2004). "Stroke detection based on the scaling properties of human EEG." Physica A 338: 246-254.

Hwa RC, He W, Ferree TC (2003). "The global effects of stroke on the human electroencephalogram."
Journal of Integrative Neuroscience 2(1): 45-53.

Hwa RC, Ferree TC (2003). "Fluctuation analysis of human EEG." In: Correlations and Fluctuations in QCD,
Proceedings of the Tenth International Workshop on Multiparticle Production, Crete, Greece.  Edited by N.G. Antoniou,
F.G. Diakonos and C.N. Ktorides, Crete, Greece, June 2002 (World Scientific, Singapore), pp 396-403.

Ferree TC, Hwa RC (2003). "Power-law scaling in human EEG: Relation to Fourier power spectrum."
Neurocomputing 52-54: 755-761.

Hwa RC, Ferree TC (2002). "Scaling properties of fluctuations in the human electroencephalogram."
Physical Review E 66: 021901.

Hwa RC, Ferree TC (2002). "Fluctuation analysis of human electroencephalogram." Nonlinear Phenomena
in Complex Systems 5(3): 302-307.

Clay MT, Ferree TC (2002). "Weighted regularization in electrical impedance tomography with applications
to acute cerebral stroke." IEEE Transactions on Medical Imaging 21(6): 629-637.

Ferree TC, Luu PL, Russell J, Tucker DM (2001). "Scalp-electrode impedance, infection risk, and EEG data quality."
Clinical Neurophysiology 112(3): 536-544.

Ferree TC, Clay MT, Tucker DM (2001). "The spatial resolution of scalp EEG." Neurocomputing 38-40: 1209-1216.

Ferree TC, Eriksen KJ, Tucker DM (2001). Correction to "Regional head tissue conductivity estimation for improved EEG analysis."
IEEE Transactions on Biomedical Engineering 48(6): 742.

Ferree TC, Eriksen KJ, Tucker DM (2000). "Regional head tissue conductivity estimation for improved EEG analysis."
IEEE Transactions on Biomedical Engineering 47(12): 1584-1592.

Ferree TC, Tucker DM (1999). "Development of high-resolution EEG devices." International Journal
of Bioelectromagnetism 1: 11-16.

Ferree TC, Lockery SR (1999). "Computational rules for chemotaxis in the nematode C. elegans."
Journal of Computational Neuroscience 6: 263-277.

Morse TM, Ferree TC, Lockery SR (1998). "Robust spatial navigation in a robot inspired by C. elegans."
Adaptive Behavior: Special Issue on Biomimetic Navigation Models 6: 391-408. MIT Press.

Ferree TC, Lockery SR (1998). "Chemotaxis control by linear recurrent networks." In: Bower, J. (Ed.)
Computational Neuroscience: Trends in Research: 373-377. Plenum Press.

Ferree TC, Marcotte BA, Lockery SR (1997). "Neural network models of chemotaxis in the nematode Caenorhabditis elegans."
In: Mozer, M. C., M. I. Jordan and T. Petsche (Eds.) Advances in Neural Information Processing Systems 9: 55-61. MIT Press.

Ferree TC, Koltun DS (1997). "Inelastic nucleon contributions in (e,e') nuclear response functions."
Physical Review C 55: 1-11.

Koltun DS, Ferree TC (1995). "Nuclear binding effects in relativistic Coulomb sum rules."
Physical Review C 52: 901-914.

Ferree TC, Koltun DS (1994). "Relativistic Coulomb sum rules for (e,e')."
Physical Review C 49: 1961-1975.

Ferree TC, Price CE and Shepard JR (1993). "Exact one-loop vacuum polarization effects
in (1+1)-dim quantum hadrodynamics." Physical Review C 47: 573-586.

Shepard JR, Price CE, Ferree TC (1993). "Exact one-fermion loop contributions in (1+1)-dimensional solitons."
Physical Review D 48: 822-834.

Ferree TC (1992). "Exact vacuum polarization in (1+1)-dimensional finite nuclei." Doctoral Thesis,
University of Colorado, Boulder

Phillips JA, Ferree TC, Wang J (1989). "Earth-based observations of Faraday rotation in radio bursts from Jupiter."
Journal of Geophysical Research 94: 5457-5466.